Publications of Karla Rubio

Cordero, J.; Swaminathan, G.; Rogel-Ayala, D. G.; Rubio, K.; Elsherbiny, A.; Mahmood, S.; Szymanski, W.; Graumann, J.; Braun, T.; Guenther, S. et al.; Dobreva, G.; Barreto, G.: Nuclear microRNA 9 mediates G-quadruplex formation and 3D genome organization during TGF-β-induced transcription. NATURE COMMUNICATIONS 15 (1), 10711 (2024)

Rubio, K.; Mueller, J. M.; Mehta, A.; Watermann, I.; Olchers, T.; Koch, I.; Wessels, S.; Schneider, M. A.; Araujo-Ramos, T.; Singh, I. et al.; Kugler, C.; Stoleriu, M. G.; Kriegsmann, M.; Eichhorn, M.; Muley, T.; Merkel, O. M.; Braun, T.; Ammerpohl, O.; Reck, M.; Tresch, A.; Barreto, G.: Preliminary results from the EMoLung clinical study showing early lung cancer detection by the LC score. DISCOVER ONCOLOGY 14 (1), 181 (2023)

Swain , J.; Merida , P.; Rubio, K.; Bracquemond , D.; Neyret , A.; Aguilar-Ordon , I.; Guenther, S.; Barreto, G.; Muriaux , D.: F-actin nanostructures rearrangements and regulation are essential for SARS-CoV-2 particle production in host pulmonary cells. ISCIENCE 26 (8), 107384 (2023)

Rubio, K.; Romero-Olmedo, A. J.; Sarvari, P.; Swaminathan, G.; Ranvir, V. P.; Rogel-Ayala, D.; Cordero, J.; Guenther, S.; Mehta, A.; Bassaly, B. et al.; Braubach, P.; Wygrecka, M.; Gattenloehner, S.; Tresch, A.; Braun, T.; Dobreva, G.; Rivera, M. N.; Singh, I.; Graumann, J.; Barreto, G.: Non-canonical integrin signaling activates EGFR and RAS-MAPK-ERK signaling in small cell lung cancer. THERANOSTICS 13 (8), pp. 2384 - 2407 (2023)

Olmedo-Suarez, M. A.; Ramirez-Diaz, I.; Perez-Gonzalez, A.; Molina-Herrera, A.; Coral-Garcia, M. A.; Lobato, S.; Sarvari, P.; Barreto, G.; Rubio, K.: Epigenetic Regulation in Exposome-Induced Tumorigenesis: Emerging Roles of ncRNAs. BIOMOLECULES 12 (4), 513 (2022)

Chen, X.; Li, Y.; Rubio, K.; Deng, B.; Li, Y.; Tang, Q.; Mao, C.; Liu, S.; Xiao, D.; Barreto, G. et al.; Tao, Y.: Lymphoid-specific helicase in epigenetics, DNA repair and cancer. BRITISH JOURNAL OF CANCER (2021)

Dobersch, S.; Rubio, K.; Singh, I.; Guenther, S.; Graumann, J.; Cordero, J.; Castillo-Negrete, R.; Huynh, M. B.; Mehta, A.; Braubach, P. et al.; Cabrera-Fuentes, H.; Bernhagen, J.; Chao, C.-M.; Bellusci, S.; Guenther, A.; Preissner, K. T.; Kugel, S.; Dobreva, G.; Wygrecka, M.; Braun, T.; Papy-Garcia, D.; Barreto, G.: Positioning of nucleosomes containing gamma-H2AX precedes active DNA demethylation and transcription initiation. NATURE COMMUNICATIONS 12 (1), 1072 (2021)

Rubio, K.; Castillo-Negrete, R.; Barreto, G.: Non-coding RNAs and nuclear architecture during epithelial-mesenchymal transition in lung cancer and idiopathic pulmonary fibrosis. CELLULAR SIGNALLING 70, 109593 (2020)

Schnieder, J.; Mamazhakypov, A.; Birnhuber, A.; Wilhelm, J.; Kwapiszewska, G.; Ruppert, C.; Markart, P.; Wujak, L.; Rubio, K.; Barreto, G. et al.; Schaefer, L.; Wygrecka, M.: Loss of LRP1 promotes acquisition of contractile-myofibroblast phenotype and release of active TGF-beta 1 from ECM stores. MATRIX BIOLOGY 88, pp. 69 - 88 (2020)

Castillo, X.; Castro-Obregon, S.; Gutierrez-Becker, B.; Gutierrez-Ospina, G.; Karalis, N.; Khalil, A. A.; Socrates Lopez-Noguerola, J.; Lozano Rodriguez, L.; Martinez-Martinez, E.; Perez-Cruz, C. et al.; Perez-Velazquez, J.; Pina, M. L.; Rubio, K.; Salazar Garcia, H. P.; Syeda, T.; Vanoye-Carlo, A.; Villringeruo, A.; Winek, K.; Zille, M.: Re-thinking the Etiological Framework of Neurodegeneration. FRONTIERS IN NEUROSCIENCE 13, 728 (2019)

Dobersch, S.; Rubio, K.; Barreto, G.: Pioneer Factors and Architectural Proteins Mediating Embryonic Expression Signatures in Cancer. TRENDS IN MOLECULAR MEDICINE 25 (4), pp. 287 - 302 (2019)

Rubio, K.; Dobersch, S.; Barreto, G.: Functional interactions between scaffold proteins, noncoding RNAs, and genome loci induce liquid-liquid phase separation as organizing principle for 3-dimensional nuclear architecture: implications in cancer. FASEB JOURNAL 33 (5), pp. 5814 - 5822 (2019)

Rubio, K.; Singh, I.; Dobersch, S.; Sarvari, P.; Guenther, S.; Cordero, J.; Mehta, A.; Wujak, L.; Cabrera-Fuentes, H.; Chao, C.-M. et al.; Braubach, P.; Bellusci, S.; Seeger, W.; Guenther, A.; Preissner, K. T.; Wygrecka, M.; Savai, R.; Papy-Garcia, D.; Dobreva, G.; Heikenwalder, M.; Savai-Pullamsetti, S.; Braun, T.; Barreto, G.: Inactivation of nuclear histone deacetylases by EP300 disrupts the MiCEE complex in idiopathic pulmonary fibrosis. NATURE COMMUNICATIONS 10, 2229 (2019)

Singh, I.; Contreras, A.; Cordero, J.; Rubio, K.; Dobersch, S.; Guenther, S.; Jeratsch, S.; Mehta, A.; Krueger, M.; Graumann, J. et al.; Seeger, W.; Dobreva, G.; Braun, T.; Barreto, G.: MiCEE is a ncRNA-protein complex that mediates epigenetic silencing and nucleolar organization. NATURE GENETICS 50 (7), pp. 990 - + (2018)